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DebianMed

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Discuss Debian Med issuses https://jitsi.debian.social/DebianMedCovid192 Servers

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2 May 2021
@b342:matrix.debian.social@b342oh , that a must ? I leave , sorry18:00:00
@b342:matrix.debian.social@b342I didn't knew18:00:01
@andreas_tille:matrix.orgAndreas TilleYou do not need to - but it is nice to know who is here.18:00:45
@b342:matrix.debian.social@b342ah ok, I'll rejoin then18:03:17
@b342:matrix.debian.social@b342thanks18:03:18
@b342:matrix.debian.social@b342I thought it would be like minidebconf :) with intersting stuff I can learn18:07:32
@b342:matrix.debian.social@b342Are there packages for covid exposure (locationsetc) ?18:20:24
7 May 2021
@emollier:matrix.orgemollier Andreas Tille: by chance, do you have the git history of psychopy on your hard drive ? I was to look at #988147, but the salsa repository is missing version 2020.2.10 in testing. 16:13:40
@emollier:matrix.orgemollier (thanks gargantua_kerr for the ping and dm grants btw) 16:13:58
@gargantua_kerr:matrix.orggargantua_kerr emollier: Andreas pinged me that he will be away till Monday evening. Since this is an RC bug, I'd recommend simply NMU'ing from source in the archive. We will make the adjustment in git later 16:23:21
@emollier:matrix.orgemollierthanks for the notice, I'll take over from the source code in the archive.16:24:58
@smoe:matrix.orgsmoeHello, some packages still in unstable have dependencies on data packages for which they cannot migrate to testing. This then looks like Loading required package: pd.mapping50k.xba240 Loading required package: pd.mapping50k.hind240 for r-bioc-oligoclasses and another one needs BSgenome.Hsapiens.UCSC.hg19. The "problem" is the large size and fairly frequent updates, as in >700MB for the latter. On the other hand, we should have our human genome not only as on package in Debian. Should we just package this and see how this goes? Ask on -devel? 18:03:06
@gargantua_kerr:matrix.orggargantua_kerrI think a few other packages also have a dependency on this data, and all tests that depend on it have been disabled, see this: http://codesearch.debian.net/search?q=BSgenome.Hsapiens.UCSC.hg19+path%3Adebian%2Fpatches&literal=118:13:50
@gargantua_kerr:matrix.orggargantua_kerrSince most of these tests have been disabled by Dylan Aissi, maybe we could ask him once18:14:20
@gargantua_kerr:matrix.orggargantua_kerrBTW r-bioc-oligoclasses has been accepted after soft freeze began, so this package will anyway not make it into this release18:14:54
@gargantua_kerr:matrix.orggargantua_kerrI don't think size of data is a problem here. What was objected to was vendoring that data in debian/ dir and then frequently updating the package18:16:14
@gargantua_kerr:matrix.orggargantua_kerrBut for individual datasets, we should be fine18:16:33
@gargantua_kerr:matrix.orggargantua_kerrFor example we have https://tracker.debian.org/pkg/dataset-fashion-mnist18:16:38
@smoe:matrix.orgsmoe[RFS] I elimiinated an RC bug on https://salsa.debian.org/r-pkg-team/r-bioc-gsva (missing build dep) but my key expired. And two RC bugs for https://salsa.debian.org/python-team/packages/python-louvain - nothing urgent. 21:25:14
@smoe:matrix.orgsmoeHad another look at bcbio with their 1.5.8, but did not get much further. It rather worse, I tend to think since they now issue permission errors that do look independent from what Debian is doing.21:30:13
@smoe:matrix.orgsmoeFor our release notes, should we possibly inform about the number of packages the Debian Med team maintains? And about the number of installations in popularity-contest that are reported in Debian (and maybe also in Ubuntu)?21:39:39
8 May 2021
@andreas_tille:matrix.orgAndreas Tille
In reply to @emollier:matrix.org
(thanks gargantua_kerr for the ping and dm grants btw)
Sorry, I have no access to my hard drive that might contain those changes before Sunday evening. I'll check then.
05:29:15
@andreas_tille:matrix.orgAndreas Tille
In reply to @smoe:matrix.org
For our release notes, should we possibly inform about the number of packages the Debian Med team maintains? And about the number of installations in popularity-contest that are reported in Debian (and maybe also in Ubuntu)?
Ubuntu is not publishing popcon data (as far as I know - I would love to add these numbers to the tasks pages if I'm wrong here). Regarding adding statistics to the release note I'm a bit unsure since summing up the number of packages says just "this is much" - not sure. Feel free to add a patch to the release notes proposal.
05:34:41
@gargantua_kerr:matrix.orggargantua_kerr smoe: r-bioc-gsva uploaded after fixing autopkgtest 06:10:36
@gargantua_kerr:matrix.orggargantua_kerr smoe: For lovain, why change in the package name? 06:11:18
@gargantua_kerr:matrix.orggargantua_kerrhttps://salsa.debian.org/python-team/packages/python-louvain/-/blob/master/debian/control#L1506:11:19
@gargantua_kerr:matrix.orggargantua_kerrIf it needs to be done, then it need to go via NEW again06:11:52
9 May 2021
@emollier:matrix.orgemollier
In reply to @andreas_tille:matrix.org
Sorry, I have no access to my hard drive that might contain those changes before Sunday evening. I'll check then.
Thanks, no worries, the new iteration is uploaded. I keep the debdiff around mainly in case of full freeze; will apply it to the VCS once once changes are pushed.
09:16:35
@andreas_tille:matrix.orgAndreas TillePushed all my commits to psychopy. Thanks a lot for your patience.20:40:46
11 May 2021
@nausiyanmeow:matrix.orgNausiyan Nyan (currently not well) changed their display name from Nausiyan Nyan to Nausiyan Nyan (currently not well).00:58:54

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