!psMHorTBGOSjTOvqua:matrix.org

BEP021: Common electrophysiological derivatives

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https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw/edit?usp=sharing1 Servers

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24 Aug 2018
@emdupre:matrix.orgemdupre🎉 ok ! It took me like a day to come around to that idea, but I think it make sense. then yes, the organization / distribution becomes the next practical q..16:17:01
@teonbrooks:matrix.org@teonbrooks:matrix.orgoh, i was just thinking annotations, not all derivatives16:17:37
@teonbrooks:matrix.org@teonbrooks:matrix.orgsorry, jumped the gun in agreeing too soon16:17:49
@teonbrooks:matrix.org@teonbrooks:matrix.orglol16:17:51
@teonbrooks:matrix.org@teonbrooks:matrix.orglet me think on it a bit longer16:18:52
@mainakjas:matrix.orgmainakjasI'm wondering if it's wise to redefine something that is already deffined in BEP003 ...16:18:57
@emdupre:matrix.orgemduprenothing is defined in BEP003 ! that's for today 😆16:19:26
@emdupre:matrix.orgemdupre but do you think this is a redefinition, mainakjas ? 16:19:38
@teonbrooks:matrix.org@teonbrooks:matrix.org😂16:19:48
@teonbrooks:matrix.org@teonbrooks:matrix.orgwhoa, my emojis are huge!16:19:57
@mainakjas:matrix.orgmainakjas teonbrooks: bigger emojis won't convince me faster :) 16:23:53
@dorahermes:matrix.orgdorahermesI just added some fields for the _annot.json:16:24:54
@dorahermes:matrix.orgdorahermesimage.png
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16:25:15
@dorahermes:matrix.orgdorahermesjust a draft16:25:22
@dorahermes:matrix.orgdorahermesin BEP02116:25:38
@dorahermes:matrix.orgdorahermesI guess this will change with current BEP003 discussions...16:26:11
@mainakjas:matrix.orgmainakjashow is the link relative if the derivative is independant?16:26:24
@mainakjas:matrix.orgmainakjasthanks @dor16:26:44
@mainakjas:matrix.orgmainakjas dorahermes: 16:26:48
@dorahermes:matrix.orgdorahermesif you mark bad data segments on an original file, but are only sharing preprocessed data16:28:19
@dorahermes:matrix.orgdorahermesinputData =/sub-01/ses-01/eeg/..._eeg.<ext>16:28:52
@dorahermes:matrix.orgdorahermesIntendedFor =/derivatives/my_pipeline/sub-01/ses-01/eeg/...variant-filtered_eeg.<ext>16:29:27
@mainakjas:matrix.orgmainakjasthe annotations are often referring to the data that is not yet preprocessed, right? Although I agree it could also point to the preprocessed data16:30:16
@mainakjas:matrix.orgmainakjasmaybe let's jot down some examples?16:30:23
@dorahermes:matrix.orgdorahermesBoth can happen. You can run an artifact detection algorithm on raw data and on epoched data.16:31:13
@mainakjas:matrix.orgmainakjasyes, so what would be inputData if you did not process your raw data?16:31:51
@dorahermes:matrix.orgdorahermesit would have the path relative to the BIDS root dir: /sub-01/ses-01/eeg/sub-01_ses-01_task-funtask_eeg.<ext>16:32:50
@dorahermes:matrix.orgdorahermesthe same as intendedFor16:33:01
@dorahermes:matrix.orgdorahermesI a not sure whether we need intendedFor, or only input data16:33:31
@mainakjas:matrix.orgmainakjasme neither, I'm agnostic to either option ...16:34:04

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