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BEP021: Common electrophysiological derivatives

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https://docs.google.com/document/d/1PmcVs7vg7Th-cGC-UrX8rAhKUHIzOI-uIOh69_mvdlw/edit?usp=sharing1 Servers

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Timestamp Message
24 Aug 2018
16:25:15@dorahermes:matrix.orgdorahermesimage.png
image.png
16:25:22@dorahermes:matrix.orgdorahermesjust a draft
16:25:38@dorahermes:matrix.orgdorahermesin BEP021
16:26:11@dorahermes:matrix.orgdorahermesI guess this will change with current BEP003 discussions...
16:26:24@mainakjas:matrix.orgmainakjashow is the link relative if the derivative is independant?
16:26:44@mainakjas:matrix.orgmainakjasthanks @dor
16:26:48@mainakjas:matrix.orgmainakjas dorahermes:
16:28:19@dorahermes:matrix.orgdorahermesif you mark bad data segments on an original file, but are only sharing preprocessed data
16:28:52@dorahermes:matrix.orgdorahermesinputData =/sub-01/ses-01/eeg/..._eeg.<ext>
16:29:27@dorahermes:matrix.orgdorahermesIntendedFor =/derivatives/my_pipeline/sub-01/ses-01/eeg/...variant-filtered_eeg.<ext>
16:30:16@mainakjas:matrix.orgmainakjasthe annotations are often referring to the data that is not yet preprocessed, right? Although I agree it could also point to the preprocessed data
16:30:23@mainakjas:matrix.orgmainakjasmaybe let's jot down some examples?
16:31:13@dorahermes:matrix.orgdorahermesBoth can happen. You can run an artifact detection algorithm on raw data and on epoched data.
16:31:51@mainakjas:matrix.orgmainakjasyes, so what would be inputData if you did not process your raw data?
16:32:50@dorahermes:matrix.orgdorahermesit would have the path relative to the BIDS root dir: /sub-01/ses-01/eeg/sub-01_ses-01_task-funtask_eeg.<ext>
16:33:01@dorahermes:matrix.orgdorahermesthe same as intendedFor
16:33:31@dorahermes:matrix.orgdorahermesI a not sure whether we need intendedFor, or only input data
16:34:04@mainakjas:matrix.orgmainakjasme neither, I'm agnostic to either option ...
16:47:34@stefanappelhoff:matrix.orgstefanappelhoff joined the room.
16:56:17@dorahermes:matrix.orgdorahermeshi Stefan
17:05:45@stefanappelhoff:matrix.orgstefanappelhoffHi there :-)
17:41:54@teonbrooks:matrix.orgteonbrooks hi stefanappelhoff
18:05:33@teonbrooks:matrix.orgteonbrooks mainakjas: i solved your split file issue on mne https://github.com/mne-tools/mne-python/pull/5470
20:14:07@dorahermes:matrix.orgdorahermes@fi
20:14:11@dorahermes:matrix.orgdorahermessorry
20:15:51@dorahermes:matrix.orgdorahermes Chris Gorgolewski: in the common derivatives BIDS003, what is the difference between the dataset_description.json and the metadata organization section?
20:16:28@filo:matrix.orgChris Gorgolewskithe metadata organization are the sidecar JSONs
20:16:36@filo:matrix.orgChris Gorgolewskifor individual derivatives
22:11:15@mainakjas:matrix.orgmainakjas Thanks teonbrooks for the pull request. You can close the issue in mne-bids once it's merged in mne-python
26 Sep 2018
15:04:49@mainakjas:matrix.orgmainakjasadded a link to this chatroom in the google doc to make the discussions more dynamic

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