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rebelScience | Bioinformatics Chat

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29 Jan 2023
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)Hi!! One way, apart from doing a list based on literary review, is to try the RGI platform 😊👍 you usually get a list of possible resistant genes in your genome 👍. After that, you can extract those genes from your genome and align them with reference genes with or without mutations that confer resistance to certain antibiotics 😊20:35:58
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram) Forwarded message from Malika Ahuja (Telegram)
#Gene #resistant
Hello,
I want to find out the resistant genes from an organism that are already discovered.
Can someone help me with how to find out list of such genes
20:35:59
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to rebelCoder (Telegram)
Hello! When you say "resistant gene", resistant to what exactly?
Hi!! One way, apart from doing a list based on literary review, is to try the RGI platform 😊👍 you usually get a list of possible resistant genes in your genome 👍. After that, you can extract those genes from your genome and align them with reference genes with or without mutations that confer resistance to certain antibiotics 😊
20:36:47
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to rebelCoder (Telegram)
Hello! When you say "resistant gene", resistant to what exactly?
There are other several tools like like AMRFinderplus, abricate, Resfinder, etc
20:39:47
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)But RGI uses the CARD database so it could be a good starting point 👍20:40:14
@telegram_427809590:tchncs.deレブ (Telegram)
In reply to Lila Maciel Rodríguez Pérez (Telegram)
Hi guys! Is there someone here who is taking a python course? I'm doing the 100 days of code challenge and I wanted to know if someone wants to do it too 😊. It's good to do it in groups for accountability 😃
let`s give it a try!
20:41:28
@telegram_427809590:tchncs.deレブ (Telegram)* lets give it a try!20:41:42
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to Lila Maciel Rodríguez Pérez (Telegram)
Hi!! One way, apart from doing a list based on literary review, is to try the RGI platform 😊👍 you usually get a list of possible resistant genes in your genome 👍. After that, you can extract those genes from your genome and align them with reference genes with or without mutations that confer resistance to certain antibiotics 😊
You can compare the sequences in the Multiple Sequence Alignment and check if mutations of interest are present or not in the genes or your genomes 😆 i loved that part 😀
20:42:26
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)* You can compare the sequences in the Multiple Sequence Alignment and check if mutations of interest are present or not in the genes of your genomes 😆 i loved that part 😀20:43:03
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)* You can compare the sequences in the Multiple Sequence Alignment and check if mutations of interest are present or not in the genes of your genomes 😆 i loved doing that part and finding crucial mutations for my bacteria 😀20:43:30
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to Adonis Cedeño (Telegram)
I'm in
Great 😃
20:43:55
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to レブ (Telegram)
let`s give it a try!
Great 😃
20:44:09
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)* There are other several tools like AMRFinderplus, abricate, Resfinder, etc21:28:46
30 Jan 2023
@telegram_305496376:tchncs.derebelCoder (Telegram) Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help. 09:05:25
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with
 symbols:

print("this is my awesome Python code!")

for x in range(10):
print(x)
```
09:07:04
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with
 symbols:

print("this is my awesome Python code!")

for x in range(10):
print(x)
09:07:09
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with "
"

```python
print("this is my awesome Python code!")

for x in range(10):
    print(x)
09:07:34
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with "
"

```
print("this is my awesome Python code!")

for x in range(10):
    print(x)
09:07:38
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with three ` symbols:


print("this is my awesome Python code!")

for x in range(10):
    print(x)
09:07:57
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (Telegram: Link, Matrix: Link). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with three ` symbols:


print("this is my awesome Python code!")

for x in range(10):
    print(x)
09:13:46
@telegram_305496376:tchncs.derebelCoder (Telegram) * Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (Telegram: Link, Matrix: Link , ⬅️ Both are linked). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.

Also, try using good formatting for your code: with three ` symbols:


print("this is my awesome Python code!")

for x in range(10):
    print(x)
09:14:10
@telegram_963938747:tchncs.deAdonis Cedeño (Telegram)
In reply to rebelCoder (Telegram)
Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.
What an admin! Thanks
10:58:00
@telegram_305496376:tchncs.derebelCoder (Telegram) @SilverTaqMan Also, if you will d in in our code channel, ad not in a private chat, that could be very helpful to others. By discussing your course code there, you contribute to the community. 10:59:50
@telegram_305496376:tchncs.derebelCoder (Telegram) * @SilverTaqMan Also, if you will do it in our code channel, ad not in a private chat, that could be very helpful to others. By discussing your course code there, you contribute to the community. 10:59:59
@telegram_305496376:tchncs.derebelCoder (Telegram) * @SilverTaqMan Also, if you will do it in our code channel, and not in a private chat, that could be very helpful to others. By discussing your course code there, you contribute to the community. 11:00:06
@telegram_5547485896:tchncs.deLila Maciel Rodríguez Pérez (Telegram)
In reply to rebelCoder (Telegram)
Lila Maciel @SilverTaqMan @your_levchik That is a very cool idea! I suggest you discuss Programming specific stuff in our Code chat (https://t.me/biotechcode). I will be more than happy to help you out if/when your group is stuck on some of your course stuff. I am sure others will also be happy to help.
Thank you so much @rebelCoder !!!! 😃✨✨🌟🌟⚡️
12:23:38
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