| 22 Aug 2018 |
|  David Obenshain changed their display name from david.obenshain to David Obenshain. | 03:08:18 |
 emdupre | Mainak and I just checked in ! Will probably head to dinner, soon, if there's another group that's interested | 03:18:20 |
|  arokem joined the room. | 03:22:47 |
| arokem | Hello! Flight delayed in SEA-TAC 😞 | 03:23:22 |
| emdupre | That is an adorable sticker for a sad event ! | 03:26:23 |
|  andrewhoopes joined the room. | 03:32:35 |
 Chris Gorgolewski | Sorry to hear that Ariel. Hopefully it will not get cancelled. | 03:46:13 |
|  @mih:matrix.org joined the room. | 04:14:13 |
|  yarikoptic joined the room. | 04:50:27 |
| yarikoptic | In reply to @filo:matrix.org
Sorry to hear that Ariel. Hopefully it will not get cancelled. Woohoo, one more new tech! | 04:57:06 |
|  henkmutsaerts joined the room. | 05:22:25 |
| henkmutsaerts | Good morning from Amsterdam! | 05:22:51 |
| @mih:matrix.org | +1 for using matrix! | 05:30:13 |
| Chris Gorgolewski | Morning! | 06:03:37 |
| henkmutsaerts | Evening! | 06:14:21 |
| @mih:matrix.org | towards lunch...! | 06:55:02 |
| arokem | Made it! | 06:58:48 |
|  Michael Notter joined the room. | 07:51:37 |
|  alex_leemans joined the room. | 08:08:06 |
| alex_leemans set a profile picture. | 08:15:48 |
|  @remi_gau:matrix.org joined the room. | 08:21:14 |
| Michael Notter changed their display name from miykael to Michael Notter. | 08:25:35 |
| yarikoptic | In reply to @arokem:matrix.org
Made it! Welcome to cold California! | 09:29:21 |
|  melanieganz joined the room. | 09:58:31 |
| melanieganz | So sad that I cannot make it in person, but since I am up half the night with my newborn anyways, I will try and join the discussion from Europe. ;-) | 10:00:07 |
| melanieganz | Hi adamthomas , let's definitely try and arrange a discussion regarding the PET standard and database grant. One of Gitte and my PhD students, martinnorgaard, is on site. | 10:10:26 |
| @remi_gau:matrix.org set a profile picture. | 12:05:05 |
| @remi_gau:matrix.org | Hey all,
I have just send an email to the BIDS mailing regarding adding some "recommended fields" to BIDS (core) and derivatives to try to make it match better the COBIDAS report recommendations.
I will just paste here the stuff related to the derivatives (though it relates mostly to functional stuff so might be out of order for common derivatives).
Mostly for functional and resting-state derivatives
COBIDAS - D3 - Preprocessing
Add in the relevant side-car json files for each pipeline:
Ordering of preprocessing steps
Slice time correction
reference slice
interpolation type
Motion correction
numbers degrees of freedom
reference scan
cost function
interpolation type
use of motion susceptibility correction
combined with slice timing
Coregistration (intrasubject and intersubject)
source image (assumed to be mean BOLD?)
type of transformation
cost function
interpolation type
choice of warp
use of regularization and parameters used
Smoothing
Size and type of smoothing kernel
Filtering approach (e.g fixed kernel, iterative smoothing until fixed FWHM)
| 12:15:36 |
 adamthomas | In reply to @melanieganz:matrix.org
Hi adamthomas , let's definitely try and arrange a discussion regarding the PET standard and database grant. One of Gitte and my PhD students, martinnorgaard, is on site. Hi Mel, That's a great idea. You're on maternity leave, right? | 13:11:52 |
| adamthomas | Ah, jost read your other post. Congratulations! | 13:12:50 |
