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8 Apr 2024
@sebastianecheverrir:matrix.orgsebastianecheverrir
In reply to @askhl:matrix.org
    opt = FIRE2(a,
                dt=0.1,
                maxstep=0.2,
                dtmax=1.0,
                Nmin=20,
                finc=1.1,
                fdec=0.5,
                astart=0.25,
                fa=0.99)
    opt.run(fmax=0.001)
    e1 = a.get_potential_energy()
    n1 = opt.nsteps

    a = system_setup()

    reset_history = []

    def callback(a, r, e, e_last):
        reset_history.append([e - e_last])

    opt = FIRE2(a,
                dt=0.1,
                maxstep=0.2,
                dtmax=1.0,
                Nmin=20,
                finc=1.1,
                fdec=0.5,
                astart=0.25,
                fa=0.99,
                abc=True,
                position_reset_callback=callback)

Here (for example) there are two calls to FIRE2. Many of the parameters are the same. What about:

def new_fire2(arg1, arg2):
    return FIRE2(arg1=arg1, arg2=arg2, <all the things that are the same go here>)
* Thanks, it much clearer.
I made some changes and pushed them to the branch. I get that the pipeline fails, but it seems to be related to other features of ASE. Can you please take a look? Here is the link to the pull request https://gitlab.com/ase/ase/-/merge_requests/3284
14:42:40
9 Apr 2024
@askhl:matrix.orgAsk Hjorth Larsen sebastianecheverrir: Thanks, You'll need to merge from master and push in order for tests to pass. This is due to unrelated updates 14:00:02
@chronum:matrix.orgAnubhab Haldar1000002651.png
Download 1000002651.png
17:32:47
@chronum:matrix.orgAnubhab HaldarDeprecated since what now.17:32:56
10 Apr 2024
@sebastianecheverrir:matrix.orgsebastianecheverrir
In reply to @askhl:matrix.org
sebastianecheverrir: Thanks, You'll need to merge from master and push in order for tests to pass. This is due to unrelated updates
Andrew Rosen: Thanks for fixing this issue. It seems that everything is now ready to incorporate ABCFire into the main branch!
In case something else is needed, please do not hesitate to tell me
08:08:00
@shuanghan:matrix.orgShuang "Shaun" Han Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator but setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? 10:37:42
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator but setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP files, e.g. OUTCAR. 10:38:40
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator but setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP files for restarting, e.g. OUTCAR. 10:38:51
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator and setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP files for restarting, e.g. OUTCAR. 10:39:22
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator and setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP files for restarting, e.g. OUTCAR, CHGCAR. 10:40:12
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator and setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP output files, e.g. OUTCAR, CHGCAR. 10:41:28
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator and setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP output files, e.g. OUTCAR, CHGCAR, . 12:25:43
@shuanghan:matrix.orgShuang "Shaun" Han * Hi ASE devs. I have done thousands of VASP calculations using the ASE Vasp calculator, but forgot to turn on the lvhar=True for outputting electrostatic potential. I also didn't save json files for the states of the Vasp calculator. Is there anyway I can reload the Vasp calculator and setting lvhar=True so that I can get the electrostatic potentials without rerunning all the calculations? I have all the relevant VASP output files, e.g. OUTCAR, CHGCAR, WAVECAR. 12:25:50
@mjwaters:matrix.orgmjwaters Shuang "Shaun" Han: can you do vasp(restart=) to parse your input parameters? 13:10:24
@mjwaters:matrix.orgmjwatersThen you might be able to create a new vasp calculator VASP(lvhar=True ,**oldparams)13:11:29
@mjwaters:matrix.orgmjwaterssince the wavecar and chgcar have all the electronic data you could also read them in with the correct ICHG and INIWAVE settings. From there, you might be able to use algo=None to just compute the lvhar with repeating the SCF cycle. Of course, the SCF cycle would be minimal since you have the converged wavefunctions. 13:15:52
11 Apr 2024
@askhl:matrix.orgAsk Hjorth Larsen Bar is open over in #ase-bar:matrix.org 19:09:50
@arosen:matrix.orgAndrew Rosen
In reply to @sebastianecheverrir:matrix.org
Andrew Rosen: Thanks for fixing this issue. It seems that everything is now ready to incorporate ABCFire into the main branch!
In case something else is needed, please do not hesitate to tell me
I left you one remaining comment to address. Thanks! 👍️
22:21:31
12 Apr 2024
@sebastianecheverrir:matrix.orgsebastianecheverrir
In reply to @arosen:matrix.org
I left you one remaining comment to address. Thanks! 👍️
Thanks Andrew. The comments have been addressed. 👍️
08:19:29
13 Apr 2024
@sebastianecheverrir:matrix.orgsebastianecheverrirAndrew Rosen: Ask Hjorth Larsen: Thanks for your help incorporating ABCFIRE into ASE. I hope people will use it. Looking forward to working together again in the future. 06:42:32
14 Apr 2024
@chronum:matrix.orgAnubhab HaldarIncredible time to throw all of my geometries at this.16:47:29
18 Apr 2024
@askhl:matrix.orgAsk Hjorth Larsen Bar is open over in #ase-bar:matrix.org 19:02:30
20 Apr 2024
@atuzhykov:matrix.orgAndriy Tuzhykov joined the room.10:17:17
@atuzhykov:matrix.orgAndriy TuzhykovWarm greetings from Ukraine. dear ASE community18:05:18
25 Apr 2024
@chronum:matrix.orgAnubhab HaldarMinimahopping has become unusably slow. Don't know if it's always been this way, but I have a fix, will push sometime.18:17:23
@askhl:matrix.orgAsk Hjorth Larsen Bar is open over in #ase-bar:matrix.org 19:05:46
@askhl:matrix.orgAsk Hjorth Larsen mjwaters: I know you're there (or so says Matrix) 19:17:52
@mjwaters:matrix.orgmjwatersokay, give me a min20:07:19
@sergiomassa:sibnsk.net@sergiomassa:sibnsk.net removed their profile picture.22:35:39
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