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Bioinformatics Chat

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Bioinformatics chat about programming, tools, and projects in biology. For code discussions, join #biotechcode:matrix.org YouTube: https://bit.ly/2xzJXE8 Website: https://rebelscience.club/34 Servers

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24 Nov 2020
@mr.d1701:matrix.orgmr.d1701 joined the room.16:17:29
@telegram_1319575868:tchncs.deTobo (Telegram)Alberts "the cell"16:28:24
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25 Nov 2020
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26 Nov 2020
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@telegram_1438232834:tchncs.detelegram_1438232834Redacted or Malformed Event05:58:52
27 Nov 2020
@telegram_752333268:tchncs.detelegram_752333268Anyone can please suggest me some bioinformatics company or sites for online project work?17:36:03
28 Nov 2020
@telegram_1457151519:tchncs.deMahabub Mallik (Telegram) joined the room.01:53:24
@telegram_588730244:tchncs.deIchanice (Telegram)Does anyone have ever use pymol for work or practice?09:14:58
@telegram_588730244:tchncs.deIchanice (Telegram) changed their display name from Ichan Joler (Telegram) to Ichanice (Telegram).09:15:03
@telegrambot:tchncs.deTelegram bridge bot
In reply to Ichanice (Telegram)
Does anyone have ever use pymol for work or practice?
YouTube seems to have a huge amount of good quality tutorials on PyMOL.
09:28:53
@telegram_1254836378:tchncs.deGeorge M (Telegram) joined the room.16:25:12
@telegram_1254836378:tchncs.deGeorge M (Telegram)Hey guys I’m doing a postgraduate in bioinformatics and would love some help16:25:55
@telegram_1254836378:tchncs.deGeorge M (Telegram)I’ve aligned some short reads to a reference genome using BWA but now I’m unsure how to go about calculating depth coverage per scaffold, is this possible with samtools? Can you recommend anything?16:28:33
@telegram_41176913:tchncs.deDaniyar (Telegram)
In reply to Georgie Massen (Telegram)
I’ve aligned some short reads to a reference genome using BWA but now I’m unsure how to go about calculating depth coverage per scaffold, is this possible with samtools? Can you recommend anything?
you can use samtools depth
17:12:26
@telegram_1254836378:tchncs.deGeorge M (Telegram)
In reply to Daniyar (Telegram)
you can use samtools depth
I’ve tried this and it’s not producing something that’s useful I don’t think
17:15:17
@telegram_1254836378:tchncs.deGeorge M (Telegram)
In reply to Daniyar (Telegram)
you can use samtools depth
Maybe it’s an error in how I’m applying it
17:15:27
@telegram_1254836378:tchncs.deGeorge M (Telegram) changed their display name from Georgie Massen (Telegram) to George M (Telegram).17:15:38
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29 Nov 2020
@elementsmatrix:matrix.orgelementsmatrix joined the room.20:45:55
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30 Nov 2020
@telegram_1151239044:tchncs.detelegram_1151239044Hi guys I am doing undergraduate in bioinformatics07:16:21
@telegram_1151239044:tchncs.detelegram_1151239044Did any one know tool for differential transcriptome expression ?07:16:56
@telegram_1151239044:tchncs.detelegram_1151239044For rna data07:17:03
@telegram_1297502919:tchncs.deLuffy (Telegram)DESeq2 r package07:21:29
@telegram_1168587176:tchncs.dePrabhashis (Telegram) joined the room.09:56:14

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